An S4 class to store differential expression results

Slots

results: A named list of data.frames, each corresponding to a method (e.g., edgeR, DESeq2, etc.)
methodNames: A character vector of methods used
parameters: A list of parameters used in the analysis
consensus: A list containing consensus DEG results

Examples

obj <- createExpressionResultSet(
  results = list(edgeR = data.frame(gene = "g1", logFC = 1)),
  methodNames = "edgeR",
  parameters = list(),
  consensus = list()
)
obj
#> ExpressionResultSet object
#> Methods executed: edgeR
#> Result tables: 1
#> Consensus: not computed or empty.