Constructor for ExpressionResultSet

Usage

createExpressionResultSet(
  results,
  methodNames,
  parameters = list(),
  consensus = list()
)

Arguments

results: Named list of data.frames (or NULL elements).
methodNames: Character vector with method names.
parameters: List of analysis parameters.
consensus: List with consensus results (default: empty list).

Value

An ExpressionResultSet object.

Examples

res_list <- list(
  edgeR = data.frame(gene = c("g1", "g2"), logFC = c(1.2, -0.4)),
  DESeq2 = NULL
)

obj <- createExpressionResultSet(
  results = res_list,
  methodNames = c("edgeR", "DESeq2"),
  parameters = list(alpha = 0.05),
  consensus = list(g1 = TRUE)
)

obj
#> ExpressionResultSet object
#> Methods executed: edgeR, DESeq2
#> Result tables: 2
#> Consensus: available (1 gene(s))
summary(obj)
#> Summary of ExpressionResultSet
#> ---------------------------------
#> Methods used: edgeR, DESeq2
#> Number of result tables: 2
#> Average number of DEGs per method: 1.00
#> Number of genes in consensus: 1