Execute knowSeq differential Expression analyse

Usage

runKnowSeq(
  count,
  groupName,
  numberReplic,
  filterId = "ensembl_gene_id",
  notSapiens = FALSE
)

Arguments

count: original table count or abundance data
groupName: replicate and treatment by samples
numberReplic: number of replicate (technical or biological) by sample
filterId: The attribute used as filter to return the rest of the attributes.
notSapiens: A boolean value that indicates if the user wants the human annotation or another annotation available in BiomaRt. The possible not human dataset can be consulted by calling the following function: biomaRt::listDatasets(useMart("ensembl")).

Value

extracted results from KnowSeq (generated by KnowSeq::DEGsExtraction() function)

Examples

if (FALSE) { # \dontrun{
data(gse95077)
treats = c("BM", "JJ")
toolResult <- NULL
toolResult$knowSeq <- runKnowSeq(count = gse95077,
                               groupName = treats,
                               numberReplic = 3)
 } # }