Execute edgeR expression Analisys
Usage
runEdger(countMatrix, numberReplics, desingExperiment, methNorm = "TMM")
Arguments
- countMatrix
either a matrix of raw (read) counts.
- numberReplics
number of replicate (technical or biologcal) integer
- desingExperiment
replicate and treatment by samples
- methNorm
normalization method to be used in edgeR::calcNormFactors(), default: "TMM"
Value
edgeR report in data Frame
Examples
data(gse95077)
treats = c("BM", "JJ")
numberReplicsModel = 3
designExperimentModel <- rep(treats, each = numberReplicsModel)
toolResult <- NULL
toolResult$edger <- runEdger(countMatrix = gse95077,
numberReplics = numberReplicsModel,
desingExperiment = designExperimentModel )
#> Using classic mode.